{"id":3062,"date":"2021-04-28T11:37:58","date_gmt":"2021-04-28T11:37:58","guid":{"rendered":"https:\/\/rehmantech.net\/demo\/bsscientifics\/?p=3062"},"modified":"2021-04-28T11:47:33","modified_gmt":"2021-04-28T11:47:33","slug":"bionano-data-solutions","status":"publish","type":"post","link":"https:\/\/rehmantech.net\/demo\/bsscientifics\/research\/bionano-data-solutions\/","title":{"rendered":"Bionano Data Solutions"},"content":{"rendered":"<p>[vc_row css=&#8221;.vc_custom_1619606053693{margin-top: 450px !important;padding-bottom: 50px !important;background-color: #53565a !important;}&#8221;][vc_column][vc_single_image image=&#8221;3063&#8243; img_size=&#8221;full&#8221; alignment=&#8221;center&#8221; css=&#8221;.vc_custom_1619609431950{margin-top: -400px !important;}&#8221; label=&#8221;&#8221;][vc_column_text]<\/p>\n<h2 class=\"font_2\" style=\"text-align: center;\"><span class=\"color_18\" style=\"color: #ffffff;\">Bionano Data Solutions<\/span><\/h2>\n<div id=\"comp-k901i7m7\" class=\"_1Z_nJ\" data-testid=\"richTextElement\">\n<p class=\"font_2\" style=\"text-align: center;\"><span style=\"font-size: 20px; color: #ffffff;\">Bionano Data Solutions\u2122 includes a complete suite of hardware and software for end-to-end experiment management, analysis and bioinformatics processing, along with convenient web-based management and monitoring tools.<\/span><\/p>\n<\/div>\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row css=&#8221;.vc_custom_1619530948625{margin-top: 50px !important;margin-bottom: 50px !important;}&#8221; el_class=&#8221;arc_1&#8243;][vc_column width=&#8221;1\/2&#8243;][vc_single_image image=&#8221;3064&#8243; img_size=&#8221;full&#8221; add_caption=&#8221;yes&#8221; alignment=&#8221;center&#8221; onclick=&#8221;link_image&#8221; lightbox=&#8221;yes&#8221; animation_type=&#8221;fadeInUp&#8221; label=&#8221;&#8221;][\/vc_column][vc_column width=&#8221;1\/2&#8243;][vc_column_text]<\/p>\n<h2 style=\"text-align: center;\"><span style=\"color: #333399;\">BIONANO ACCESS<\/span><\/h2>\n<div class=\"description\">\n<p><strong>Automate data analysis: monitor and manage Saphyr remotely<\/strong><\/p>\n<p>Bionano Access\u2122, your web-based hub for Saphyr operations, provides all the software you need for experiment management and Bionano optical genome mapping in one place.<\/p>\n<ul class=\"indent-list\">\n<li>Set up runs and monitor real-time data quality metrics remotely to flag potential sample quality issues early<\/li>\n<li>Automatically start\u00a0<em>de novo<\/em>\u00a0assemblies and structural variation analysis when the desired amount of data has been collected<\/li>\n<li>Visualize and manipulate maps and structural variants<\/li>\n<li>Analyze trios by filtering through uncommon variants to identify inherited and\u00a0<em>de novo<\/em>\u00a0variants, and export in a dbVar-compliant VCF file<\/li>\n<li>Find somatic variants by comparing tumor vs matched normal samples<\/li>\n<li>Find heterogeneous\/mosaic variants down to 1% allele fraction<\/li>\n<\/ul>\n<\/div>\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row css=&#8221;.vc_custom_1618837660793{padding-top: 50px !important;padding-bottom: 50px !important;background-color: #fafafa !important;}&#8221; el_class=&#8221;arc_3&#8243;][vc_column width=&#8221;1\/6&#8243;][\/vc_column][vc_column width=&#8221;2\/3&#8243;][vc_row_inner][vc_column_inner]<div class=\"porto-u-heading\" data-hspacer=\"line_only\" data-halign=\"left\" style=\"text-align:left\" data-appear-animation=\"fadeInUp\"><div class=\"porto-u-main-heading\"><h4>BIONANO COMPUTE ON DEMAND<\/h4><\/div><div class=\"porto-u-heading-spacer line_only\" style=\"height:5px;\"><span class=\"porto-u-headings-line\" style=\"border-style:solid;border-bottom-width:5px;border-color:#a561a9;width:50px;margin-left: 0\"><\/span><\/div><\/div>[vc_column_text]<strong>Reduce infrastructure costs and increase your optical genome mapping capacity<\/strong><\/p>\n<p>Bionano Compute On Demand is a pay-per-use solution accessible through Bionano Access web server for your Bionano Solve operations. Compute On Demand simplifies the way you perform genome assembly, hybrid scaffolding, and structural variant analysis, without the need for any additional infrastructure, giving you the flexibility and scalability your experiment deserves. Advantages include:<\/p>\n<ul>\n<li>Analyze large genomes and high number of samples simultaneously<\/li>\n<li>Perform pipeline analysis operations without worrying about server capacity<\/li>\n<li>Data encrypted for secure operations<\/li>\n<li>Data centers compliant with IPAA, CSA, SOC2, ITAR regulations<\/li>\n<li>Genomic data accessible only to end-users and deleted post-processing<\/li>\n<\/ul>\n<p>Bionano Compute on Demand requires Bionano Access 1.6.1 which is available on our\u00a0<a href=\"https:\/\/bionanogenomics.com\/support\/software-downloads\/#bionanoaccess\">Software Downloads page<\/a>.<\/p>\n<p><strong>For more information,\u00a0<a href=\"https:\/\/bionanogenomics.com\/wp-content\/uploads\/2019\/09\/Bionano-Genomics-Compute-On-Demand-One-Sheet.pdf\" target=\"_blank\" rel=\"noopener\">download the Bionano Compute On Demand brochure<\/a><\/strong>.[\/vc_column_text][\/vc_column_inner][\/vc_row_inner][\/vc_column][vc_column width=&#8221;1\/6&#8243;][\/vc_column][\/vc_row][vc_row css=&#8221;.vc_custom_1618837619231{padding-top: 50px !important;}&#8221; el_class=&#8221;arc_5&#8243;][vc_column width=&#8221;1\/6&#8243;][\/vc_column][vc_column width=&#8221;2\/3&#8243;]<div class=\"porto-u-heading\" data-hspacer=\"line_only\" data-halign=\"center\" style=\"text-align:center\" data-appear-animation=\"fadeInUp\"><div class=\"porto-u-main-heading\"><h2>TYPICAL NUMBER OF COMPUTE ON DEMAND TOKENS REQUIRED<\/h2><\/div><div class=\"porto-u-heading-spacer line_only\" style=\"height:5px;\"><span class=\"porto-u-headings-line\" style=\"border-style:solid;border-bottom-width:5px;border-color:#a561a9;width:50px;\"><\/span><\/div><\/div>[vc_column_text]<\/p>\n<div class=\"table-responsive\">\n<table class=\"product-table product-table-custom\">\n<tbody>\n<tr>\n<td class=\"column-1\" valign=\"top\">Human de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">Calculated<\/td>\n<td class=\"column-4\" valign=\"top\">Max tokens computed based on input molecules. 2 Tbp limit (down sampled to 250x at runtime)<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Non-Human or No Reference de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">50<\/td>\n<td class=\"column-4\" valign=\"top\">Below 300 Gbp<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Non-Human or No Reference de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">10<\/td>\n<td class=\"column-3\" valign=\"top\">150<\/td>\n<td class=\"column-4\" valign=\"top\">300 &#8211; 500 Gbp<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Non-Human or No Reference de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">20<\/td>\n<td class=\"column-3\" valign=\"top\">250<\/td>\n<td class=\"column-4\" valign=\"top\">500 &#8211; 1000 Gbp<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Non-Human or No Reference de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">30<\/td>\n<td class=\"column-3\" valign=\"top\">400<\/td>\n<td class=\"column-4\" valign=\"top\">1000 &#8211; 2000 Gbp<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Non-Human or No Reference de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">40<\/td>\n<td class=\"column-3\" valign=\"top\">500<\/td>\n<td class=\"column-4\" valign=\"top\">2000 &#8211; 3000 Gbp (Limit Increased)<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Non-Human or No Reference de Novo Assembly<\/td>\n<td class=\"column-2\" valign=\"top\">50<\/td>\n<td class=\"column-3\" valign=\"top\">650<\/td>\n<td class=\"column-4\" valign=\"top\">3000 &#8211; 4000 Gbp (New Tier)<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Scaffold<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">30<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Two Enzyme Hybrid Scaffold<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">30<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Variant Annotation (Single)<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">3<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Variant Annotation (dual or trio)<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">10<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Bnx Merge<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">2<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Filter Bnx<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">2<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">MQR<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">2<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">SV Merge<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">5<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Alignment<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">4<\/td>\n<td class=\"column-4\" valign=\"top\"><\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Rare Variant Analysis<\/td>\n<td class=\"column-2\" valign=\"top\">3<\/td>\n<td class=\"column-3\" valign=\"top\">25<\/td>\n<td class=\"column-4\" valign=\"top\">0 &#8211; 2000 Gbp<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Rare Variant Analysis<\/td>\n<td class=\"column-2\" valign=\"top\">5<\/td>\n<td class=\"column-3\" valign=\"top\">50<\/td>\n<td class=\"column-4\" valign=\"top\">2000 &#8211; 6000 Gbp (New Tier)<\/td>\n<\/tr>\n<tr>\n<td class=\"column-1\" valign=\"top\">Bionano Enfocus FSHD Analysis<\/td>\n<td class=\"column-2\" valign=\"top\">1<\/td>\n<td class=\"column-3\" valign=\"top\">5<\/td>\n<td class=\"column-4\" valign=\"top\">New Operation<\/td>\n<\/tr>\n<\/tbody>\n<thead>\n<tr>\n<th valign=\"top\">OPERATION<\/th>\n<th valign=\"top\">MIN TOKENS<\/th>\n<th valign=\"top\">MAX TOKENS<\/th>\n<th valign=\"top\">NOTES<\/th>\n<\/tr>\n<\/thead>\n<\/table>\n<div class=\"footnote\">\n<p>*Number of tokens required dependent on the data quality and coverage<\/p>\n<\/div>\n<\/div>\n<p>[\/vc_column_text][\/vc_column][vc_column width=&#8221;1\/6&#8243;][\/vc_column][\/vc_row][vc_row wrap_container=&#8221;yes&#8221; no_padding=&#8221;yes&#8221; css=&#8221;.vc_custom_1619607006321{padding-top: 50px !important;padding-bottom: 50px !important;}&#8221;][vc_column][vc_row_inner css=&#8221;.vc_custom_1618676285170{margin-top: 50px !important;}&#8221;][vc_column_inner]<div class=\"porto-u-heading\" data-hspacer=\"line_only\" data-halign=\"left\" style=\"text-align:left\" data-appear-animation=\"fadeInUp\"><div class=\"porto-u-main-heading\"><h4>SAPHYR COMPUTE SERVER<\/h4><\/div><div class=\"porto-u-heading-spacer line_only\" style=\"height:5px;\"><span class=\"porto-u-headings-line\" style=\"border-style:solid;border-bottom-width:5px;border-color:#a561a9;width:50px;margin-left: 0\"><\/span><\/div><\/div>[vc_column_text]<strong>Enhanced data processing power for high-speed optical genome mapping<\/strong><\/p>\n<p>The Saphyr Compute Server offers cluster-like performance in an affordable, compact solution. Capable of performing multiple simultaneous analyses and sustaining continuous throughput, the Saphyr Compute Server allows you to spend less time waiting for data so you can focus on investigating results.<\/p>\n<ul>\n<li>Perform\u00a0<em>de novo<\/em>\u00a0assembly of a human genome in approximately 9 hours<\/li>\n<li>Simple web-based interface enables integration into virtually any network setup<\/li>\n<li>Cloud-based solutions available<\/li>\n<\/ul>\n<p>[\/vc_column_text][\/vc_column_inner][\/vc_row_inner][\/vc_column][\/vc_row][vc_row css=&#8221;.vc_custom_1618837660793{padding-top: 50px !important;padding-bottom: 50px !important;background-color: #fafafa !important;}&#8221; el_class=&#8221;arc_3&#8243;][vc_column width=&#8221;1\/6&#8243;][\/vc_column][vc_column width=&#8221;2\/3&#8243;][vc_row_inner][vc_column_inner width=&#8221;1\/2&#8243;]<div class=\"porto-u-heading\" data-hspacer=\"line_only\" data-halign=\"left\" style=\"text-align:left\" data-appear-animation=\"fadeInUp\"><div class=\"porto-u-main-heading\"><h4>BIONANO COMPUTE SERVER<\/h4><\/div><div class=\"porto-u-heading-spacer line_only\" style=\"height:5px;\"><span class=\"porto-u-headings-line\" style=\"border-style:solid;border-bottom-width:5px;border-color:#a561a9;width:50px;margin-left: 0\"><\/span><\/div><\/div>[vc_column_text]<strong>Additional power for Saphyr<\/strong><\/p>\n<p>The Bionano Compute Server is a stand-alone, secondary compute server that offers the ability to perform automated genome assembly, hybrid scaffolding and structural variant calling in parallel with the Saphyr Compute Server. Additional Bionano Compute Servers can be added for increased processing power.[\/vc_column_text]<div class=\"porto-u-heading\" data-hspacer=\"line_only\" data-halign=\"left\" style=\"text-align:left\" data-appear-animation=\"fadeInUp\"><div class=\"porto-u-main-heading\"><h4>BIONANO DATA SOLUTIONS ORDERING INFORMATION<\/h4><\/div><div class=\"porto-u-heading-spacer line_only\" style=\"height:5px;\"><span class=\"porto-u-headings-line\" style=\"border-style:solid;border-bottom-width:5px;border-color:#a561a9;width:50px;margin-left: 0\"><\/span><\/div><\/div>[vc_column_text]<\/p>\n<ul>\n<li>Saphyr Compute Server: Part # 80013<\/li>\n<li>Bionano Compute Server: Part # 80014<\/li>\n<li>Bionano Compute On Demand, US:\u00a0Part # 90047<\/li>\n<li>Bionano Compute On Demand, Germany:\u00a0Part # 90052<\/li>\n<li>Bionano Compute On Demand, Europe:\u00a0Part # 90060<\/li>\n<\/ul>\n<p>[\/vc_column_text][\/vc_column_inner][vc_column_inner width=&#8221;1\/2&#8243;][vc_single_image image=&#8221;3065&#8243; img_size=&#8221;full&#8221; add_caption=&#8221;yes&#8221; alignment=&#8221;center&#8221; onclick=&#8221;link_image&#8221; lightbox=&#8221;yes&#8221; animation_type=&#8221;fadeInUp&#8221; label=&#8221;&#8221;][\/vc_column_inner][\/vc_row_inner][\/vc_column][vc_column width=&#8221;1\/6&#8243;][\/vc_column][\/vc_row]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>[vc_row css=&#8221;.vc_custom_1619606053693{margin-top: 450px !important;padding-bottom: 50px !important;background-color: #53565a !important;}&#8221;][vc_column][vc_single_image image=&#8221;3063&#8243; img_size=&#8221;full&#8221; alignment=&#8221;center&#8221; css=&#8221;.vc_custom_1619609431950{margin-top: -400px !important;}&#8221; label=&#8221;&#8221;][vc_column_text] Bionano Data Solutions Bionano Data Solutions\u2122 includes a complete suite of hardware and software for end-to-end experiment management, analysis and bioinformatics processing, along with convenient web-based management and monitoring tools. [\/vc_column_text][\/vc_column][\/vc_row][vc_row css=&#8221;.vc_custom_1619530948625{margin-top: 50px !important;margin-bottom: 50px !important;}&#8221; el_class=&#8221;arc_1&#8243;][vc_column width=&#8221;1\/2&#8243;][vc_single_image image=&#8221;3064&#8243; img_size=&#8221;full&#8221; [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":3064,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[48,4],"tags":[],"class_list":["post-3062","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-microvicioner","category-research"],"featured_image_src":{"landsacpe":["https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-content\/uploads\/2021\/04\/datasolutions_monitorFeature_2019-1040x445.png",1040,445,true],"list":["https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-content\/uploads\/2021\/04\/datasolutions_monitorFeature_2019-463x348.png",463,348,true],"medium":["https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-content\/uploads\/2021\/04\/datasolutions_monitorFeature_2019-296x300.png",296,300,true],"full":["https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-content\/uploads\/2021\/04\/datasolutions_monitorFeature_2019.png",1040,1054,false]},"_links":{"self":[{"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/posts\/3062","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/comments?post=3062"}],"version-history":[{"count":1,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/posts\/3062\/revisions"}],"predecessor-version":[{"id":3066,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/posts\/3062\/revisions\/3066"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/media\/3064"}],"wp:attachment":[{"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/media?parent=3062"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/categories?post=3062"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/rehmantech.net\/demo\/bsscientifics\/wp-json\/wp\/v2\/tags?post=3062"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}